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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63353549_63381740_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63353549 - 63381740
Intron Length:
28192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
ACTGTTTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTTCTGATTT
Flanking Amino Acid:
MAETAAEGRMSMTTTII
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
65
0.34
1
57.9
42.6
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
57.1
0.3
1.7
75.98
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026000
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037240
63353527 - 63427538
74012