Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63397961_63420352_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63397961 - 63420352

Intron Length:

22392

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGTCAC

5'SS Class:

major

3'SS Sequence:

TTTTTTTTCCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGGAT

U12 Branch Point Sequence:

TATGGATTTACT

Flanking Amino Acid:

EGEVESSLKKVIHRDKPEKQ

Intron Amino Acid Position:

168

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.2

64.4

41.8

Major BPS

63.6

0.34

1.4

63.4

44.3

Major PPT

89.6

0.89

0.6

84.8

Minor 5ss

29.5

-2.4

2.9

35.4

41.2

Minor BPS

45.8

-0.2

2.4

70.16

46.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026000

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028408

63381656 - 63427538

45883