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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63420413_63423021_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63420413 - 63423021
Intron Length:
2609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
GTTTTTTAGACA
Flanking Amino Acid:
EKIEKKEPIKVTHKDKTERQ
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
82.6
0.73
0.7
76.7
32
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
57.5
0.23
1.7
69.98
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026000
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026833
63381656 - 63427538
45883
ENSAPLT00000025997
63381656 - 63427538
45883
ENSAPLT00000037240
63353527 - 63427538
74012
ENSAPLT00000025494
63345759 - 63424944
79186
ENSAPLT00000030805
63381656 - 63427538
45883
ENSAPLT00000028408
63381656 - 63427538
45883