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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63424669_63427344_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63424669 - 63427344
Intron Length:
2676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TACTTATTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTCCTAATA
Flanking Amino Acid:
EKHEKKAPPKVIQKDKPERH
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78
0.63
0.8
70.3
40
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
71.9
0.68
1.6
83.62
30.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026000
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028408
63381656 - 63427538
45883
ENSAPLT00000026833
63381656 - 63427538
45883
ENSAPLT00000025997
63381656 - 63427538
45883
ENSAPLT00000037240
63353527 - 63427538
74012
ENSAPLT00000030805
63381656 - 63427538
45883