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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63432063_63436646_F

Intron Information:

Intron Rank:
106824
Intron Class:
major
Intron Phase:
Intron Coordinates:
63432063 - 63436646
Intron Length:
4584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.6
0.53
1
74
36.7
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
65.7
0.57
1.9
84.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041410
63431945 - 63562661
130717
ENSAPLT00000027310
63431868 - 63562661
130794
ENSAPLT00000026869
63431868 - 63562661
130794
ENSAPLT00000038027
63431868 - 63563668
131801
ENSAPLT00000025146
63431868 - 63562661
130794
ENSAPLT00000035262
63431945 - 63548563
116619
ENSAPLT00000046304
63431945 - 63562661
130717
ENSAPLT00000015027
63431868 - 63562661
130794
ENSAPLT00000034627
63431868 - 63563668
131801