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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63436707_63451021_F

Intron Information:

Intron Rank:
106825
Intron Class:
major
Intron Phase:
Intron Coordinates:
63436707 - 63451021
Intron Length:
14315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTCC
5'SS Class:
major
3'SS Sequence:
TGTACTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
37
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
74.6
0.55
1
69.2
41.6
Minor 5ss
40.5
-1.1
2.9
54.3
42.8
Minor BPS
85.2
1.08
1
86.92
29.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027310
63431868 - 63562661
130794
ENSAPLT00000041410
63431945 - 63562661
130717
ENSAPLT00000026869
63431868 - 63562661
130794
ENSAPLT00000038027
63431868 - 63563668
131801
ENSAPLT00000025146
63431868 - 63562661
130794
ENSAPLT00000035262
63431945 - 63548563
116619
ENSAPLT00000015027
63431868 - 63562661
130794
ENSAPLT00000034627
63431868 - 63563668
131801
ENSAPLT00000046304
63431945 - 63562661
130717