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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63462157_63463034_F

Intron Information:

Intron Rank:
106828
Intron Class:
major
Intron Phase:
Intron Coordinates:
63462157 - 63463034
Intron Length:
878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTAAATCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTCTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
65.6
0.35
1
60.5
43.8
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
83.7
1.13
1
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026869
63431868 - 63562661
130794
ENSAPLT00000038027
63431868 - 63563668
131801
ENSAPLT00000025146
63431868 - 63562661
130794
ENSAPLT00000035262
63431945 - 63548563
116619
ENSAPLT00000015027
63431868 - 63562661
130794
ENSAPLT00000034627
63431868 - 63563668
131801
ENSAPLT00000027310
63431868 - 63562661
130794
ENSAPLT00000041410
63431945 - 63562661
130717