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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63489160_63501942_F

Intron Information:

Intron Rank:
106831
Intron Class:
major
Intron Phase:
Intron Coordinates:
63489160 - 63501942
Intron Length:
12783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAA
U12 Branch Point Sequence:
GTGTGCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
52.6
0.07
1
59.7
32.6
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
65.1
0.56
1.8
79.87
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025146
63431868 - 63562661
130794
ENSAPLT00000035262
63431945 - 63548563
116619
ENSAPLT00000015027
63431868 - 63562661
130794
ENSAPLT00000034627
63431868 - 63563668
131801
ENSAPLT00000046304
63431945 - 63562661
130717
ENSAPLT00000027310
63431868 - 63562661
130794
ENSAPLT00000041410
63431945 - 63562661
130717
ENSAPLT00000026869
63431868 - 63562661
130794
ENSAPLT00000038027
63431868 - 63563668
131801