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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63501976_63503381_F

Intron Information:

Intron Rank:
106953
Intron Class:
major
Intron Phase:
Intron Coordinates:
63501976 - 63503381
Intron Length:
1406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTTTCTTGTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
85.7
0.8
0.8
80.1
37.1
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
62.7
0.48
1.8
84.45
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035262
63431945 - 63548563
116619