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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63516784_63522638_F

Intron Information:

Intron Rank:
106838
Intron Class:
major
Intron Phase:
Intron Coordinates:
63516784 - 63522638
Intron Length:
5855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TACTTCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATCTTCTAAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80
0.67
0.8
73.3
31.4
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
60.4
0.3
1.6
67.6
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026869
63431868 - 63562661
130794
ENSAPLT00000038027
63431868 - 63563668
131801
ENSAPLT00000025146
63431868 - 63562661
130794
ENSAPLT00000035262
63431945 - 63548563
116619
ENSAPLT00000046304
63431945 - 63562661
130717
ENSAPLT00000015027
63431868 - 63562661
130794
ENSAPLT00000034627
63431868 - 63563668
131801
ENSAPLT00000027310
63431868 - 63562661
130794
ENSAPLT00000041410
63431945 - 63562661
130717