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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63525005_63547365_F

Intron Information:

Intron Rank:
107006
Intron Class:
major
Intron Phase:
Intron Coordinates:
63525005 - 63547365
Intron Length:
22361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1.1
79
35.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.7
0.78
0.7
77.8
35.6
Minor 5ss
43.6
-0.7
2.9
61
43.6
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041410
63431945 - 63562661
130717