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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63547393_63548429_F

Intron Information:

Intron Rank:
106865
Intron Class:
major
Intron Phase:
Intron Coordinates:
63547393 - 63548429
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCATTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.8
0.72
0.7
76.8
30.7
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
55.5
0.25
1.8
75.31
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034627
63431868 - 63563668
131801
ENSAPLT00000027310
63431868 - 63562661
130794
ENSAPLT00000046304
63431945 - 63562661
130717
ENSAPLT00000026869
63431868 - 63562661
130794
ENSAPLT00000041410
63431945 - 63562661
130717
ENSAPLT00000025146
63431868 - 63562661
130794
ENSAPLT00000035262
63431945 - 63548563
116619