Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63555083_63557507_F

Intron Information:

Intron Rank:

106891

Intron Class:

major

Intron Phase:

Intron Coordinates:

63555083 - 63557507

Intron Length:

2425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTATGTGGT

5'SS Class:

major

3'SS Sequence:

TTCCTTTGTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

ATTTTGTTATGA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

71.6

38.4

Major BPS

84.6

0.86

41.2

Major PPT

78.2

0.64

0.9

72.7

37.5

Minor 5ss

42.2

-0.9

3.2

57.5

41.6

Minor BPS

45.9

-0.3

2.4

64.68

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014385

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027310

63431868 - 63562661

130794

ENSAPLT00000046304

63431945 - 63562661

130717

ENSAPLT00000026869

63431868 - 63562661

130794

ENSAPLT00000041410

63431945 - 63562661

130717

ENSAPLT00000038027

63431868 - 63563668

131801

ENSAPLT00000034627

63431868 - 63563668

131801