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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63557556_63558448_F

Intron Information:

Intron Rank:
106844
Intron Class:
major
Intron Phase:
Intron Coordinates:
63557556 - 63558448
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTGTTCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
75.3
40.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
90.9
0.92
0.6
84.7
30.2
Minor 5ss
40.6
-1
3.2
58.1
46.3
Minor BPS
59.1
0.28
1.6
65.88
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014385
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015027
63431868 - 63562661
130794
ENSAPLT00000034627
63431868 - 63563668
131801
ENSAPLT00000027310
63431868 - 63562661
130794
ENSAPLT00000046304
63431945 - 63562661
130717
ENSAPLT00000026869
63431868 - 63562661
130794
ENSAPLT00000041410
63431945 - 63562661
130717
ENSAPLT00000025146
63431868 - 63562661
130794
ENSAPLT00000038027
63431868 - 63563668
131801