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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63753129_63753219_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63753129 - 63753219
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
TCCTCATACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TATTCCTCATAC
Flanking Amino Acid:
LFEQYYNNFIIVSIRKQCGD
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
74.8
30.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
70.5
0.46
0.9
64.9
34.4
Minor 5ss
39
-1.2
3
55
43.6
Minor BPS
54.5
0.12
1.9
69.69
41.1

Associated Gene:

Gene:
SMPDL3A
Ensembl Gene ID:
ENSAPLG00000014509
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015121
63753060 - 63766669
13610