Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63753409_63754601_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63753409 - 63754601

Intron Length:

1193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACGTAAG

5'SS Class:

major

3'SS Sequence:

TTTTAAACTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTTTTTAAAC

Flanking Amino Acid:

YQYDLDYSLLDLWQFYLDLR

Intron Amino Acid Position:

352

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

70.8

Major BPS

90.4

0.7

90.2

19.3

Major PPT

74.4

0.55

0.9

68.5

37.2

Minor 5ss

34.1

-1.8

2.9

38.5

Minor BPS

76.4

0.81

1.2

82.98

29.8

Associated Gene:

Gene:

SMPDL3A

Ensembl Gene ID:

ENSAPLG00000014509

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041912

63753097 - 63771732

18636

ENSAPLT00000034645

63752935 - 63766669

13735

ENSAPLT00000015121

63753060 - 63766669

13610