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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63754724_63756645_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63754724 - 63756645
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGAAAGGTAACT
Flanking Amino Acid:
DSIMVLLDEEEKPVNSLFVA
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
68
0.45
1
57.8
39
Major PPT
84.7
0.78
0.7
79.6
25.9
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
41.2
-0.5
2.6
63.57
45.8

Associated Gene:

Gene:
SMPDL3A
Ensembl Gene ID:
ENSAPLG00000014509
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015121
63753060 - 63766669
13610
ENSAPLT00000041912
63753097 - 63771732
18636
ENSAPLT00000034645
63752935 - 63766669
13735