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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63758227_63760889_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63758227 - 63760889
Intron Length:
2663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTACTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTGGTCTTACTT
Flanking Amino Acid:
TDEAISTFRKGGFYTQLFES
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.8
39.1
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
81
0.7
0.8
75.5
32.9
Minor 5ss
37.8
-1.4
3.5
55.9
48.3
Minor BPS
58.1
0.33
1.7
74.52
43.3

Associated Gene:

Gene:
SMPDL3A
Ensembl Gene ID:
ENSAPLG00000014509
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041912
63753097 - 63771732
18636
ENSAPLT00000034645
63752935 - 63766669
13735
ENSAPLT00000015121
63753060 - 63766669
13610