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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63764135_63764659_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63764135 - 63764659
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTGTTAATA
Flanking Amino Acid:
RQQASFMIWTGDSPPHVPVK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
72.3
39.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
92.2
0.95
0.6
91.3
20.3
Minor 5ss
34.1
-1.8
2.9
36.4
40.6
Minor BPS
68.4
0.57
2
82.43
32.9

Associated Gene:

Gene:
SMPDL3A
Ensembl Gene ID:
ENSAPLG00000014509
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041912
63753097 - 63771732
18636
ENSAPLT00000034645
63752935 - 63766669
13735
ENSAPLT00000015121
63753060 - 63766669
13610