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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63769375_63770836_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63769375 - 63770836
Intron Length:
1462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTGGACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
TTTCCTTGGACT
Flanking Amino Acid:
REIKDGKMVMTLTFGDVVAV
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
88.9
24.9
Major BPS
58.7
0.22
1.2
67
38
Major PPT
74.1
0.54
1
66.1
39.8
Minor 5ss
39.5
-1.2
2.8
48.3
41.8
Minor BPS
67.8
0.64
1.4
85.63
34

Associated Gene:

Gene:
SMPDL3A
Ensembl Gene ID:
ENSAPLG00000014509
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041912
63753097 - 63771732
18636
Gene:
FABP7
Ensembl Gene ID:
ENSAPLG00000014523
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015131
63769324 - 63772219
2896