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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63770939_63771559_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63770939 - 63771559
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATATCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGATATCT
Flanking Amino Acid:
ETTPDDRNCKSVVTLDGDKL
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
77.1
0.61
0.9
74.2
39.9
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
48.3
-0
2.5
80.25
41.8

Associated Gene:

Gene:
SMPDL3A
Ensembl Gene ID:
ENSAPLG00000014509
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041912
63753097 - 63771732
18636
Gene:
FABP7
Ensembl Gene ID:
ENSAPLG00000014523
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015131
63769324 - 63772219
2896