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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63788150_63789244_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
63788150 - 63789244
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
GCTGGTGGTGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACATCAA
U12 Branch Point Sequence:
GGCACATCAAAG
Flanking Amino Acid:
HKLAELSVSEGRVGKTALPE
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
57.7
0.19
1.1
60
36
Major PPT
49.7
-0
1.2
47.8
44.1
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
41.5
-0.7
1.9
41.17
42

Associated Gene:

Gene:
PKIB
Ensembl Gene ID:
ENSAPLG00000019363
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034100
63788052 - 63793770
5719