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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6381188_6396233_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6381188 - 6396233

Intron Length:

15046

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TCCCTCCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

CCGCTGCTAACG

Flanking Amino Acid:

LEEENRMLPQVVWRKLGDAA

Intron Amino Acid Position:

405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

0.9

71.9

33.8

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

75.9

0.58

0.7

73.6

24.7

Minor 5ss

26.1

-2.7

3.2

33.4

42.6

Minor BPS

39.6

-0.9

2.2

40.29

Associated Gene:

Gene:

CCDC85A

Ensembl Gene ID:

ENSAPLG00000001419

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000001415

6381098 - 6456135

75038