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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63861391_63865006_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63861391 - 63865006
Intron Length:
3616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCGG
5'SS Class:
major
3'SS Sequence:
GTGTCCCTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ATGTTTTTACCT
Flanking Amino Acid:
VLGLCSVASWIPCLCGSAPC
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
55.2
49
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
68.1
0.41
1
66.2
40.7
Minor 5ss
29.7
-2.3
3.2
30.3
42.8
Minor BPS
62.9
0.48
1.6
77.17
40

Associated Gene:

Gene:
SERINC1
Ensembl Gene ID:
ENSAPLG00000014540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015217
63860606 - 63875311
14706