About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63865169_63865903_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63865169 - 63865903
Intron Length:
735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGGTTA
5'SS Class:
major
3'SS Sequence:
GTGTTTATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTGTGTTTATCA
Flanking Amino Acid:
IPGMEEQLKKIPGFCDGGIG
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.3
66.6
41.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.2
0.57
0.9
69.3
40.6
Minor 5ss
34.3
-1.8
3.5
46.7
48.7
Minor BPS
55.1
0.16
2
70.54
42.4

Associated Gene:

Gene:
SERINC1
Ensembl Gene ID:
ENSAPLG00000014540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015217
63860606 - 63875311
14706