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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63866098_63868960_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63866098 - 63868960
Intron Length:
2863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
SNDPRAAVHNGFWFFKFATA
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
SERINC1
Ensembl Gene ID:
ENSAPLG00000014540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015217
63860606 - 63875311
14706