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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63871369_63871495_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63871369 - 63871495
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
CTACTTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTGCTTAACT
Flanking Amino Acid:
SVMSILPKIQESQPRSGLLQ
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.9
0.56
0.9
69.1
35.9
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
74.6
0.85
1.7
87.87
37

Associated Gene:

Gene:
SERINC1
Ensembl Gene ID:
ENSAPLG00000014540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015217
63860606 - 63875311
14706