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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63871587_63872602_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63871587 - 63872602
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTCCTTCACA
Flanking Amino Acid:
LTWSAMTNEPDRRCNPSLLS
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.4
0.73
0.8
76.6
31.3
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
77.1
0.85
1.7
85.87
33.2

Associated Gene:

Gene:
SERINC1
Ensembl Gene ID:
ENSAPLG00000014540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015217
63860606 - 63875311
14706