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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63872745_63872892_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63872745 - 63872892
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCAAATACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
TTCCTGTCAAAT
Flanking Amino Acid:
ILFLLCVLYSSIRTSNNSQV
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
66.4
0.37
1
59.2
40
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
44.9
-0.3
2.2
66.47
44

Associated Gene:

Gene:
SERINC1
Ensembl Gene ID:
ENSAPLG00000014540
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015217
63860606 - 63875311
14706