Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63879475_63880987_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63879475 - 63880987

Intron Length:

1513

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAATTTTC

5'SS Class:

major

3'SS Sequence:

TTGTCTTATTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTTAT

U12 Branch Point Sequence:

TTTGTCTTATTC

Flanking Amino Acid:

FSIDPDLLVDLFTSSVQMNP

Intron Amino Acid Position:

477

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

77.1

32.1

Major BPS

73.7

0.59

1.2

65.7

43.2

Major PPT

82.6

0.73

0.9

81.5

35.2

Minor 5ss

47.3

-0.3

2.8

66.3

Minor BPS

0.36

1.7

73.26

38.6

Associated Gene:

Gene:

HSF2

Ensembl Gene ID:

ENSAPLG00000014710

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045440

63878030 - 63905104

27075

ENSAPLT00000015375

63877571 - 63891877

14307