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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63881917_63883047_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63881917 - 63883047
Intron Length:
1131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AACACTTTAATT
Flanking Amino Acid:
ANEDSTSDSSNCSHSPDIVI
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.9
29.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
85
0.79
0.8
78.9
33.1
Minor 5ss
33.8
-1.8
3.5
47.5
42.5
Minor BPS
65.5
0.56
1.3
72.07
39.2

Associated Gene:

Gene:
HSF2
Ensembl Gene ID:
ENSAPLG00000014710
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045440
63878030 - 63905104
27075
ENSAPLT00000030684
63878030 - 63891877
13848
ENSAPLT00000015375
63877571 - 63891877
14307