About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63883215_63884064_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63883215 - 63884064
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
AAATAATTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
VKEPADSNHHVPLNRTEGLK
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
64.5
0.33
1
59.5
44.9
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
HSF2
Ensembl Gene ID:
ENSAPLG00000014710
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045440
63878030 - 63905104
27075
ENSAPLT00000030684
63878030 - 63891877
13848
ENSAPLT00000015375
63877571 - 63891877
14307