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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63888572_63888781_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63888572 - 63888781
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTTTATTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAAAG
Flanking Amino Acid:
MASFVRQLNMYGFRKVVHVD
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
74.4
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.6
0.71
1
83.4
30.6
Minor 5ss
44.8
-0.6
2.8
60.6
43.7
Minor BPS
64.6
0.32
1.8
73.71
38.2

Associated Gene:

Gene:
HSF2
Ensembl Gene ID:
ENSAPLG00000014710
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045440
63878030 - 63905104
27075
ENSAPLT00000030684
63878030 - 63891877
13848
ENSAPLT00000015375
63877571 - 63891877
14307