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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63888891_63895211_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63888891 - 63895211
Intron Length:
6321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TAGTCTTTAAGA
Flanking Amino Acid:
FCGEEKENELNGQSFLVLDE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
78.8
0.65
0.8
76.9
31.7
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
66.9
0.53
1.6
72.07
40.3

Associated Gene:

Gene:
HSF2
Ensembl Gene ID:
ENSAPLG00000014710
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045440
63878030 - 63905104
27075