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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63895243_63896048_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63895243 - 63896048
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGTGTGCTGATG
Flanking Amino Acid:
RRLLFYLFRFRFCGEEKENE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
89.9
0.9
0.7
84.9
29.9
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
39.4
-0.9
2.3
46.8
40.8

Associated Gene:

Gene:
HSF2
Ensembl Gene ID:
ENSAPLG00000014710
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045440
63878030 - 63905104
27075