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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63896121_63904976_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63896121 - 63904976
Intron Length:
8856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
CTTAAAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTCCCTTAAAA
Flanking Amino Acid:
MAEENLNNEKQWI
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
68.1
37
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
71.2
0.48
1
62.6
41.9
Minor 5ss
35
-1.7
2.9
38.6
40
Minor BPS
80.4
0.95
1.2
86.76
30.7

Associated Gene:

Gene:
HSF2
Ensembl Gene ID:
ENSAPLG00000014710
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045440
63878030 - 63905104
27075