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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_63913020_63914680_R

Intron Information:

Intron Rank:
147197
Intron Class:
major
Intron Phase:
Intron Coordinates:
63913020 - 63914680
Intron Length:
1661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGGCTCCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TGTGTCCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
72
0.55
1
71.8
31.4
Major PPT
67
0.38
0.9
58.5
38.4
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
59
0.26
1.8
71.44
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026506
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037560
63912956 - 63915463
2508