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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6396311_6452724_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6396311 - 6452724

Intron Length:

56414

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGGTCGA

5'SS Class:

major

3'SS Sequence:

TTTTTGATTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTCTTTTTGATT

Flanking Amino Acid:

HHRSIYNGMNESTLSYVRQL

Intron Amino Acid Position:

379

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.1

57.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

83.7

0.76

0.8

82.4

Minor 5ss

26.9

-2.7

28.9

38.2

Minor BPS

70.3

0.72

1.1

81.54

34.7

Associated Gene:

Gene:

CCDC85A

Ensembl Gene ID:

ENSAPLG00000001419

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047383

6381098 - 6456135

75038

ENSAPLT00000001415

6381098 - 6456135

75038