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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64005315_64040359_R

Intron Information:

Intron Rank:
144830
Intron Class:
major
Intron Phase:
Intron Coordinates:
64005315 - 64040359
Intron Length:
35045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
TTCACTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTCTGTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
100
1.24
0.5
100
0
Major PPT
73.8
0.54
0.8
68.7
31.7
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
48.3
-0
2.4
75.16
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048284
64004946 - 64044606
39661