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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64062885_64063846_R

Intron Information:

Intron Rank:
151176
Intron Class:
major
Intron Phase:
Intron Coordinates:
64062885 - 64063846
Intron Length:
962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTATCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
84.7
28.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85
0.79
0.8
85.3
27.7
Minor 5ss
38.4
-1.3
3.4
55
49.2
Minor BPS
70.7
0.65
1.6
78.76
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028852
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044007
64061260 - 64064027
2768