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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64088383_64104408_F

Intron Information:

Intron Rank:
143351
Intron Class:
major
Intron Phase:
Intron Coordinates:
64088383 - 64104408
Intron Length:
16026

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CATTGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATCAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.9
0.69
0.9
77.2
36.7
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
58
0.33
1.9
80.37
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037690
64081830 - 64104722
22893