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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64088383_64127087_F

Intron Information:

Intron Rank:
143353
Intron Class:
major
Intron Phase:
Intron Coordinates:
64088383 - 64127087
Intron Length:
38705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAC
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
69.5
0.49
1
71.8
33.3
Major PPT
84.7
0.78
0.9
90.3
22.7
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039733
64081830 - 64129428
47599