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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64143687_64146347_R

Intron Information:

Intron Rank:
136658
Intron Class:
major
Intron Phase:
Intron Coordinates:
64143687 - 64146347
Intron Length:
2661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGATTCTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTCTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.2
33.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.5
0.55
0.9
68.3
37.4
Minor 5ss
49.1
-0.1
3
73.2
43.7
Minor BPS
53.6
0.19
2
74.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046927
64142335 - 64147947
5613