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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64187195_64228332_R

Intron Information:

Intron Rank:
140208
Intron Class:
major
Intron Phase:
Intron Coordinates:
64187195 - 64228332
Intron Length:
41138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
ATTGCCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
87.9
0.85
0.7
83.4
24.8
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
61.2
0.43
1.8
79.73
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017670
64186571 - 64229155
42585