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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64218590_64218810_F

Intron Information:

Intron Rank:
148171
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
64218590 - 64218810
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCAAAAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCATTCTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
53.4
0.08
1.1
54.9
37.4
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.8
0.02
1.6
58.41
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029786
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028022
64217987 - 64219968
1982