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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64225386_64228332_R

Intron Information:

Intron Rank:
140210
Intron Class:
major
Intron Phase:
Intron Coordinates:
64225386 - 64228332
Intron Length:
2947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATCTGCTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
78.6
0.71
1
78.6
31
Major PPT
76.9
0.6
0.9
69.8
39.4
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
68.8
0.67
1.8
81.92
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022814
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026272
64224645 - 64229155
4511