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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64257397_64263490_F

Intron Information:

Intron Rank:
125121
Intron Class:
major
Intron Phase:
Intron Coordinates:
64257397 - 64263490
Intron Length:
6094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TAATCTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
77
0.61
0.9
68.8
41.5
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
83.8
1.14
1
90.27
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017388
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029704
64254409 - 64263610
9202