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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64393412_64394050_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64393412 - 64394050
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATGTA
5'SS Class:
major
3'SS Sequence:
ATGTGTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CATTTTATAATG
Flanking Amino Acid:
CSDSDSSFNQSYTFMSQEQL
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
77.6
30.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
73.7
0.53
1
66.2
43.6
Minor 5ss
37.3
-1.4
3.4
48.7
41.9
Minor BPS
51.2
-0.1
1.6
56.43
39.8

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397