About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64394123_64395318_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64394123 - 64395318
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGACCACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTCTTTTTGACC
Flanking Amino Acid:
ERLDPIQPKEVRQEALQTLC
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
71.8
0.49
0.9
67.5
38.8
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
66.1
0.49
1.2
69.37
36.6

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397