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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_64395445_64396379_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
64395445 - 64396379
Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTTCTCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATACATT
Flanking Amino Acid:
SLSDPDATFSEKILRFYART
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.2
58.9
42.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.6
0.8
0.6
85.7
21.5
Minor 5ss
45.2
-0.5
2.9
56.3
47.9
Minor BPS
43
-0.4
2.3
68.34
42.6

Associated Gene:

Gene:
TBC1D32
Ensembl Gene ID:
ENSAPLG00000014789
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015454
64388160 - 64465556
77397